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Results Found: 22
  • Spo11-oligo mapping in wild type S. cerevisiae strain

    Authors
    van Overbeek, Megan
    Keeney, Scott
    Murakami, Hajime
    Description

    From GEO summary: To segregate accurately during meiosis, homologous chromosomes in most species must recombine. Very small chromosomes would risk missegregation if recombination were randomly distributed, so the double-strand breaks (DSBs) that initiate recombination are not haphazard. How this nonrandomness is controlled is not understood. Here we demonstrate that Saccharomyces cerevisiae integrates...

    Subject
    Chromosomes / genetics
    Access Rights
    Free to All
  • Mer2 ChIP-seq

    Authors
    Murakami, Hajime
    Keeney, Scott
    Description

    From GEO summary: Genome binding/occupancy profiling by high throughput sequencing. To segregate accurately during meiosis, homologous chromosomes in most species must recombine. Very small chromosomes would risk missegregation if recombination were randomly distributed, so the double-strand breaks (DSBs) that initiate recombination are not haphazard. How this nonrandomness is controlled is not understood....

    Subject
    Chromosomes / genetics
    Access Rights
    Free to All
  • Spo11-oligo mapping in S. cerevisiae red1, hop1, mek1 mutants

    Authors
    Lam, Isabel
    Keeney, Scott
    Description

    From GEO summary: Genome binding/occupancy profiling by high throughput sequencing. Meiotic recombination starts with the formation of DNA double-strand breaks (DSBs) made by Spo11. In Saccharomyces cerevisiae, the nonrandom distribution of meiotic DSBs along the genome can be attributed to the combined influence of multiple factors on Spo11 cleavage. One factor is higher-order chromatin structure,...

    Subject
    Chromosomes / genetics
    DNA Breaks, Double-Stranded
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    Free to All
  • Rec114 ChIP-seq

    Description

    From GEO summary: Genome binding/occupancy profiling by high throughput sequencing. DNA duplication is intimately connected to setting up post-replicative chromosome structures and events, but molecular details of this coordination are not well understood. A striking example occurs during yeast meiosis, where replication locally influences timing of the DNA double-strand breaks (DSBs) that initiate...

    Subject
    Chromosomes / genetics
    Access Rights
    Free to All
  • Pull-down of Exo1-TAP from yeast meiotic cells and analysis of phosphorylated residues

    Authors
    Loew, Damarys
    Sabatet, Valentin
    Description

    Description from the ProteomeXchange: "Exo1 tagged with the TAP sequence was pulled down from synchronous ndt80∆ meiotic cells after induction of the CDC5 kinase at t = 8 h 15 in meiosis (1 h 15 after CDC5 induction), in order to identify its phosphorylated residues" PRIDE Sample Processing Protocol: "2.1010 cells of VBD2070 strain were harvested after 8 h 15 min in sporulation medium and processed...

    Subject
    Meiosis
    MutL Proteins
    Proteome
    Recombination, Genetic
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    Free to All
  • Pull-down of Mlh3-Flag from yeast meiotic cells and analysis of pulled-down partner proteins

    Authors
    Loew, Damarys
    Sabatet, Valentin
    Description

    Description from Proteome Xchange: "Mlh3 internally tagged with Flag was pulled down from synchronous meiotic cells at t = 4 h in meiosis, in order to identify its interacting partners involved in meiotic crossover formation" Sample Processing Protocol from PRIDE: "2.1010 cells of VBD1674 strain at 4 h in meiosis were harvested, washed two times with ice-cold TNG buffer (50 mM Tris/HCl pH 8; 150...

    Subject
    Meiosis
    MutL Proteins
    Proteome
    Recombination, Genetic
    Access Rights
    Free to All
  • Mechanism of in vivo activation of the MutLgamma-Exo1 complex for meiotic crossover formation

    Authors
    Borde, Valerie
    Description

    Summary from the GEO: "Programmed DNA double-strand breaks (DSBs) initiate meiotic recombination and their subsequent repair culminates in crossover (CO) formation. COs result from the asymmetric cleavage of double-Holliday junction (dHJ) intermediates, that requires the MutLγ complex together with a non-catalytic function of Exo1, an activity essential for fertility but at risk of generating unwanted...

    Subject
    DNA Breaks, Double-Stranded
    Meiosis
    MutL Proteins
    Protein Binding
    Recombination, Genetic
    Access Rights
    Free to All
  • Mechanism of in vivo activation of the MutL-Exo1 complex for meiotic crossover formation

    Authors
    Sanchez, Aurore
    Mu, Xiaojing
    Borde, Valerie
    Keeney, Scott
    Description

    Summary from the GEO: "Programmed DNA double-strand breaks (DSBs) initiate meiotic recombination and their subsequent repair culminates in crossover (CO) formation. COs result from the asymmetric cleavage of double-Holliday junction (dHJ) intermediates, that requires the MutLγ endonuclease and a non-catalytic function of Exo1, an activity essential for fertility but at risk of generating unwanted...

    Subject
    DNA Breaks, Double-Stranded
    Meiosis
    MutL Proteins
    Protein Binding
    Recombination, Genetic
    Access Rights
    Free to All
  • Substrate discrimination and quality control require each catalytic activity of TRAMP and the nuclear RNA exosome

    Authors
    Das, Mom
    Zattas, Dimitrios
    Lima, Christopher D.
    Description

    Summary from the GEO: "Abstract: Quality control requires discrimination between functional and aberrant species to selectively target substrates for destruction. Nuclear RNA quality control in Saccharomyces cerevisiae includes the TRAMP complex that marks RNA for decay via polyadenylation and helicase-dependent 3′ to 5′ degradation by the RNA exosome. Using reconstitution biochemistry we show that...

    Subject
    Exoribonucleases
    Exosome Multienzyme Ribonuclease Complex
    Receptors, Tumor Necrosis Factor, Member 25
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    Free to All
  • Whole genome ChIP-seq of histone H3 threonine 11 phosphorylation in Saccharomyces cerevisiae

    Authors
    Murakami, Hajime
    Kniewel, Ryan
    Keeney, Scott
    Description

    Summary from the GEO: "We used ChIP-seq to determine the whole-genome enrichment of histone H3 threonine 11 phosphorylation (H3 T11ph) during Saccharomyces cerevisiae meiosis. S. cerevisiae SK1 cells were synchronized for meiotic entry and 3 and 4 hour meiotic samples were obtained. As H3 T11ph is dependent on the formation of meiotic double strand breaks (DSBs), a negative control ChIP-seq sample...

    Subject
    Chromatin Immunoprecipitation Sequencing
    Histones
    Phosphorylation
    Protein-Serine-Threonine Kinases
    Access Rights
    Free to All